vabase

PIK3CA E545A

c.1634A>CNM_006218.33-179218304-A-C
PI3K-AKT gain of function transversion Cancer hotspot Absent from gnomAD ClinVar: Pathogenic AlphaMissense: likely pathogenic LM

Reports 1 in LM

ISSVA entityAllele fractionSources
LM not reported (LEC line; direct sequencing)

Position in PIK3CA 16 catalogued variants in this gene

PI3K-ABD (16–105)PI3K-ABDPI3K-RBD (187–289)PI3K-RBDC2 PI3K-type (330–487)C2 PI3K-typePIK helical (517–694)PIK helicalPI3K/PI4K catalytic (765–1051)PI3K/PI4K ca…11068 aaR88QE109delE110delN345KC420RP447_L455delE542KE545AE545GE545KQ546KQ546RM1043IH1047LH1047R*1069Pheext*4

Pathway and targeted therapy

Variant in the PI3K-AKT pathway. Repurposed drugs already used in the clinic for this pathway: alpelisib (PI3Kα inhibitor), sirolimus (mTOR inhibitor).

Open and recent trials (4 in vascular / lymphatic anomalies for alpelisib)

Primary sources 1

  1. Activating PIK3CA alleles and lymphangiogenic phenotype of lymphatic endothelial cells isolated from lymphatic malformations.
    Osborn AJ, Dickie P, Neilson DE, Glaser K, Lynch KA, Gupta A, Dickie BH. · Hum Mol Genet · 2015

Mentioned in 245 publications indexed by Europe PMC.

Annotations refreshed 2026-10-09 from Europe PMC, ClinVar, ClinicalTrials.gov, gnomAD, and Genome Nexus. Coordinates handled per assembly (gnomAD GRCh38, Genome Nexus GRCh37).